HKFJGAFXY_n01_spo0A_T2_rep3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFJGAFXY_n01_spo0A_T2_rep3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2332840
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	3994	0.17120762675537113	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	3350	0.14360179009276247	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	2845	0.12195435606385349	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	2784	0.1193395174979853	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	2629	0.11269525556832016	No Hit
TGGGAGTCGAACCCACGTCCAGAAACATCGATTACTTAAGCGTCTACGAG	2421	0.10377908472076953	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	2402	0.10296462680681058	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCCAGT	1370	44.19677	24
GAACTCC	1420	42.640545	21
ACTCTCG	1405	42.099346	32
CTCTCGC	1430	41.6081	33
TCTCGCG	1440	41.076096	34
TCGCGCA	1475	41.05056	36
TCCAGTC	1505	40.232277	25
CTCGCGC	1480	40.202423	35
CACGTCT	1575	38.666397	14
CGCGCAT	1495	38.62849	37
TGAACTC	1575	38.221954	20
ACTCCAG	1600	38.062233	23
TCACTCT	1580	37.436443	30
ACACGTC	1630	37.14698	13
CACACGT	1635	36.819313	12
ACGTCTG	1660	36.264805	15
CCAGTCA	1660	36.264805	26
GCACACG	1710	34.999752	11
AACTCCA	1800	34.22198	22
GCGCATC	1730	32.976646	38