HKFJGAFXY_n01_spo0A_T0_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKFJGAFXY_n01_spo0A_T0_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3261949
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGA	5668	0.1737611470933482	No Hit
GTGGAGACGGTGGGAGTCGAACCCACGTCCAGAAACATCGATTACTTAAG	5443	0.16686343042150567	No Hit
TCCAGCATTAGAGGTAACAACTAGAGTACAATTTTTTCCAATAGAATCAC	5326	0.16327661775214758	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	5000	0.15328259270761133	No Hit
CCCACGTCCAGAAACATCGATTACTTAAGCGTCTACGAGCGTAGCCTGCA	4716	0.144576141441819	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	4079	0.1250479391308693	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	4052	0.12422021313024821	No Hit
CTCGTAAACACGCACTTAAATATAACTGGCAAAACTAACAGTTTTAACCA	4009	0.12290198283296276	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	3801	0.1165254269763261	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	3596	0.11024084067531405	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	3533	0.10830948000719814	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACTAAT	2240	51.7192	31
GTCACTA	2305	50.1089	29
CTAGAGT	1080	47.638577	21
ACTAATG	2440	47.336483	32
TGCGCAT	2430	46.52304	37
CCAATAG	1110	45.72042	38
ATGCGCA	2580	44.496513	36
GAACTCC	2660	43.42077	21
TCACTAA	2690	42.93718	30
AATGCGC	2770	41.949825	35
CTCCAGT	2790	41.272766	24
ACTAGAG	1265	40.67167	20
CAATAGA	1295	39.72947	39
TCCAGTC	2920	39.55514	25
ACTCCAG	2950	39.270927	23
ACGTCTG	2960	38.665287	15
AGTCACT	3025	38.529263	28
AACTAGA	1355	38.22853	19
AGAGTAC	1370	37.554497	23
GCACACG	3145	36.947292	11