FastQCFastQC Report
Mon 29 Jul 2024
HKF3VBGXV_n01_HW64.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHKF3VBGXV_n01_HW64.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8139034
Sequences flagged as poor quality0
Sequence length76
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTAT495360.6086225957527638TruSeq Adapter, Index 20 (97% over 44bp)
CCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCC422770.5194351074095526No Hit
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT107280.1318092540220375No Hit
GCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGC94760.11642659313132248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)