[2022-08-16 23:35:24,065] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-08-16 23:35:24,065] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-08-16 23:35:24,065] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-08-16 23:35:24,066] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-08-16 23:35:24,066] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-08-16 23:35:24,066] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKCGLBGXM/merged [2022-08-16 23:35:24,768] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-08-16 23:35:24,768] multiqc [INFO ] This is MultiQC v1.9 [2022-08-16 23:35:24,768] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HKCGLBGXM/merged [2022-08-16 23:35:24,768] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HKCGLBGXM/merged [2022-08-16 23:35:24,768] multiqc [INFO ] Template : default [2022-08-16 23:35:24,768] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-08-16 23:35:24,768] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HKCGLBGXM/merged [2022-08-16 23:35:24,768] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-08-16 23:35:24,768] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-23602997/tmp3fni26qh [2022-08-16 23:35:24,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2905_fastqc.html [2022-08-16 23:35:24,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search 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23:35:32,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2936_fastqc.html [2022-08-16 23:35:32,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2936_fastqc.html [2022-08-16 23:35:32,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2915_fastqc.html [2022-08-16 23:35:32,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2915_fastqc.html [2022-08-16 23:35:32,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2839_fastqc.html [2022-08-16 23:35:32,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2839_fastqc.html [2022-08-16 23:35:32,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2853_fastqc.html [2022-08-16 23:35:32,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2853_fastqc.html [2022-08-16 23:35:32,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2910_fastqc.html [2022-08-16 23:35:32,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2910_fastqc.html [2022-08-16 23:35:33,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2855_fastqc.html [2022-08-16 23:35:33,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2855_fastqc.html [2022-08-16 23:35:33,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2928_fastqc.html [2022-08-16 23:35:33,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2928_fastqc.html [2022-08-16 23:35:33,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2917_fastqc.html [2022-08-16 23:35:33,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2917_fastqc.html [2022-08-16 23:35:33,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2886_fastqc.html [2022-08-16 23:35:33,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2886_fastqc.html [2022-08-16 23:35:33,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2899_fastqc.html [2022-08-16 23:35:33,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2899_fastqc.html [2022-08-16 23:35:33,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2853_fastqc.html [2022-08-16 23:35:33,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2853_fastqc.html [2022-08-16 23:35:33,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2840_fastqc.html [2022-08-16 23:35:33,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2840_fastqc.html [2022-08-16 23:35:33,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2927_fastqc.html [2022-08-16 23:35:33,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2927_fastqc.html [2022-08-16 23:35:33,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2902_fastqc.html [2022-08-16 23:35:33,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2902_fastqc.html [2022-08-16 23:35:33,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2887_fastqc.html [2022-08-16 23:35:33,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2887_fastqc.html [2022-08-16 23:35:33,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2836_fastqc.html [2022-08-16 23:35:33,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2836_fastqc.html [2022-08-16 23:35:33,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2890_fastqc.html [2022-08-16 23:35:33,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2890_fastqc.html [2022-08-16 23:35:33,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2947_fastqc.html [2022-08-16 23:35:33,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2947_fastqc.html [2022-08-16 23:35:33,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2841_fastqc.html [2022-08-16 23:35:33,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2841_fastqc.html [2022-08-16 23:35:33,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2913_fastqc.html [2022-08-16 23:35:33,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2913_fastqc.html [2022-08-16 23:35:33,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2934_fastqc.html [2022-08-16 23:35:33,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2934_fastqc.html [2022-08-16 23:35:33,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2909_fastqc.html [2022-08-16 23:35:33,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2909_fastqc.html [2022-08-16 23:35:33,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2904_fastqc.html [2022-08-16 23:35:33,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2904_fastqc.html [2022-08-16 23:35:33,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2852_fastqc.html [2022-08-16 23:35:33,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2852_fastqc.html [2022-08-16 23:35:33,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2942_fastqc.html [2022-08-16 23:35:33,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2942_fastqc.html [2022-08-16 23:35:33,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2931_fastqc.html [2022-08-16 23:35:33,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2931_fastqc.html [2022-08-16 23:35:33,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_undetermined_fastqc.html [2022-08-16 23:35:33,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_undetermined_fastqc.html [2022-08-16 23:35:33,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2848_fastqc.html [2022-08-16 23:35:33,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2848_fastqc.html [2022-08-16 23:35:34,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2840_fastqc.html [2022-08-16 23:35:34,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2840_fastqc.html [2022-08-16 23:35:34,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2903_fastqc.html [2022-08-16 23:35:34,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2903_fastqc.html [2022-08-16 23:35:34,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2903_fastqc.html [2022-08-16 23:35:34,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2903_fastqc.html [2022-08-16 23:35:34,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2839_fastqc.html [2022-08-16 23:35:34,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2839_fastqc.html [2022-08-16 23:35:34,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2938_fastqc.html [2022-08-16 23:35:34,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2938_fastqc.html [2022-08-16 23:35:34,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2854_fastqc.html [2022-08-16 23:35:34,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2854_fastqc.html [2022-08-16 23:35:34,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2895_fastqc.html [2022-08-16 23:35:34,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2895_fastqc.html [2022-08-16 23:35:34,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2941_fastqc.html [2022-08-16 23:35:34,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2941_fastqc.html [2022-08-16 23:35:34,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2910_fastqc.html [2022-08-16 23:35:34,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2910_fastqc.html [2022-08-16 23:35:34,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2889_fastqc.html [2022-08-16 23:35:34,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2889_fastqc.html [2022-08-16 23:35:34,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2932_fastqc.html [2022-08-16 23:35:34,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2932_fastqc.html [2022-08-16 23:35:34,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2937_fastqc.html [2022-08-16 23:35:34,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2937_fastqc.html [2022-08-16 23:35:34,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2926_fastqc.html [2022-08-16 23:35:34,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2926_fastqc.html [2022-08-16 23:35:34,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2847_fastqc.html [2022-08-16 23:35:34,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2847_fastqc.html [2022-08-16 23:35:34,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2879_fastqc.html [2022-08-16 23:35:34,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2879_fastqc.html [2022-08-16 23:35:34,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2878_fastqc.html [2022-08-16 23:35:34,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2878_fastqc.html [2022-08-16 23:35:34,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2917_fastqc.html [2022-08-16 23:35:34,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2917_fastqc.html [2022-08-16 23:35:34,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2930_fastqc.html [2022-08-16 23:35:34,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2930_fastqc.html [2022-08-16 23:35:34,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_DGY1_fastqc.html [2022-08-16 23:35:34,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_DGY1_fastqc.html [2022-08-16 23:35:34,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2852_fastqc.html [2022-08-16 23:35:34,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2852_fastqc.html [2022-08-16 23:35:34,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2837_fastqc.html [2022-08-16 23:35:34,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2837_fastqc.html [2022-08-16 23:35:34,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2896_fastqc.html [2022-08-16 23:35:34,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2896_fastqc.html [2022-08-16 23:35:34,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2851_fastqc.html [2022-08-16 23:35:34,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2851_fastqc.html [2022-08-16 23:35:34,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2927_fastqc.html [2022-08-16 23:35:34,997] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2927_fastqc.html [2022-08-16 23:35:35,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_undetermined_fastqc.html [2022-08-16 23:35:35,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_undetermined_fastqc.html [2022-08-16 23:35:35,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2916_fastqc.html [2022-08-16 23:35:35,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2916_fastqc.html [2022-08-16 23:35:35,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2939_fastqc.html [2022-08-16 23:35:35,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2939_fastqc.html [2022-08-16 23:35:35,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2921_fastqc.html [2022-08-16 23:35:35,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2921_fastqc.html [2022-08-16 23:35:35,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2908_fastqc.html [2022-08-16 23:35:35,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2908_fastqc.html [2022-08-16 23:35:35,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2920_fastqc.html [2022-08-16 23:35:35,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n02_2920_fastqc.html [2022-08-16 23:35:35,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2925_fastqc.html [2022-08-16 23:35:35,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HKCGLBGXM_n01_2925_fastqc.html [2022-08-16 23:35:35,689] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-08-16 23:35:35,691] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-08-16 23:35:35,743] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 97 samples (table) [2022-08-16 23:35:35,744] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-08-16 23:35:35,754] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-08-16 23:35:35,760] multiqc [DEBUG ] No samples found: conpair [2022-08-16 23:35:35,764] multiqc [DEBUG ] No samples found: peddy [2022-08-16 23:35:35,769] multiqc [DEBUG ] No samples found: somalier [2022-08-16 23:35:35,774] multiqc [DEBUG ] No samples found: methylQA [2022-08-16 23:35:35,781] multiqc [DEBUG ] No samples found: mosdepth [2022-08-16 23:35:35,785] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-08-16 23:35:35,788] multiqc [DEBUG ] No samples found: qualimap [2022-08-16 23:35:35,793] multiqc [DEBUG ] No samples found: preseq [2022-08-16 23:35:35,797] multiqc [DEBUG ] No samples found: quast [2022-08-16 23:35:35,803] multiqc [DEBUG ] No samples found: qorts [2022-08-16 23:35:35,807] multiqc [DEBUG ] No samples found: rna_seqc [2022-08-16 23:35:35,814] multiqc [DEBUG ] No samples found: rockhopper [2022-08-16 23:35:35,820] multiqc [DEBUG ] No samples found: rsem [2022-08-16 23:35:35,831] multiqc [DEBUG ] No samples found: rseqc [2022-08-16 23:35:35,835] multiqc [DEBUG ] No samples found: busco [2022-08-16 23:35:35,840] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-08-16 23:35:35,844] multiqc [DEBUG ] No samples found: disambiguate [2022-08-16 23:35:35,849] multiqc [DEBUG ] No samples found: supernova [2022-08-16 23:35:35,862] multiqc [DEBUG ] No samples found: deeptools [2022-08-16 23:35:35,868] multiqc [DEBUG ] No samples found: sargasso [2022-08-16 23:35:35,873] multiqc [DEBUG ] No samples found: verifybamid [2022-08-16 23:35:35,877] multiqc [DEBUG ] No samples found: mirtrace [2022-08-16 23:35:35,883] multiqc [DEBUG ] No samples found: happy [2022-08-16 23:35:35,889] multiqc [DEBUG ] No samples found: mirtop [2022-08-16 23:35:35,895] multiqc [DEBUG ] No samples found: homer [2022-08-16 23:35:35,899] multiqc [DEBUG ] No samples found: macs2 [2022-08-16 23:35:35,905] multiqc [DEBUG ] No samples found: theta2 [2022-08-16 23:35:35,909] multiqc [DEBUG ] No samples found: snpeff [2022-08-16 23:35:35,917] multiqc [DEBUG ] No samples found: gatk [2022-08-16 23:35:35,921] multiqc [DEBUG ] No samples found: htseq [2022-08-16 23:35:35,926] multiqc [DEBUG ] No samples found: bcftools [2022-08-16 23:35:35,930] multiqc [DEBUG ] No samples found: featureCounts [2022-08-16 23:35:35,936] multiqc [DEBUG ] No samples found: fgbio [2022-08-16 23:35:35,947] multiqc [DEBUG ] No samples found: dragen [2022-08-16 23:35:35,951] multiqc [DEBUG ] No samples found: dedup [2022-08-16 23:35:35,956] multiqc [DEBUG ] No samples found: damageprofiler [2022-08-16 23:35:35,980] multiqc [DEBUG ] No samples found: biobambam2 [2022-08-16 23:35:35,984] multiqc [DEBUG ] No samples found: mtnucratio [2022-08-16 23:35:35,986] multiqc [DEBUG ] No samples found: picard [2022-08-16 23:35:35,992] multiqc [DEBUG ] No samples found: prokka [2022-08-16 23:35:35,996] multiqc [DEBUG ] No samples found: samblaster [2022-08-16 23:35:36,004] multiqc [DEBUG ] No samples found: samtools [2022-08-16 23:35:36,010] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-08-16 23:35:36,017] multiqc [DEBUG ] No samples found: bamtools [2022-08-16 23:35:36,023] multiqc [DEBUG ] No samples found: jellyfish [2022-08-16 23:35:36,032] multiqc [DEBUG ] No samples found: vcftools [2022-08-16 23:35:36,038] multiqc [DEBUG ] No samples found: longranger [2022-08-16 23:35:36,042] multiqc [DEBUG ] No samples found: stacks [2022-08-16 23:35:36,047] multiqc [DEBUG ] No samples found: varscan2 [2022-08-16 23:35:36,061] multiqc [DEBUG ] No samples found: bbmap [2022-08-16 23:35:36,067] multiqc [DEBUG ] No samples found: bismark [2022-08-16 23:35:36,071] multiqc [DEBUG ] No samples found: biscuit [2022-08-16 23:35:36,076] multiqc [DEBUG ] No samples found: hicexplorer [2022-08-16 23:35:36,080] multiqc [DEBUG ] No samples found: hicup [2022-08-16 23:35:36,084] multiqc [DEBUG ] No samples found: hicpro [2022-08-16 23:35:36,088] multiqc [DEBUG ] No samples found: salmon [2022-08-16 23:35:36,092] multiqc [DEBUG ] No samples found: kallisto [2022-08-16 23:35:36,097] multiqc [DEBUG ] No samples found: slamdunk [2022-08-16 23:35:36,101] multiqc [DEBUG ] No samples found: star [2022-08-16 23:35:36,105] multiqc [DEBUG ] No samples found: hisat2 [2022-08-16 23:35:36,110] multiqc [DEBUG ] No samples found: tophat [2022-08-16 23:35:36,116] multiqc [DEBUG ] No samples found: bowtie2 [2022-08-16 23:35:36,120] multiqc [DEBUG ] No samples found: bowtie1 [2022-08-16 23:35:36,124] multiqc [DEBUG ] No samples found: snpsplit [2022-08-16 23:35:36,128] multiqc [DEBUG ] No samples found: kat [2022-08-16 23:35:36,134] multiqc [DEBUG ] No samples found: leehom [2022-08-16 23:35:36,138] multiqc [DEBUG ] No samples found: adapterRemoval [2022-08-16 23:35:36,142] multiqc [DEBUG ] No samples found: clipandmerge [2022-08-16 23:35:36,146] multiqc [DEBUG ] No samples found: cutadapt [2022-08-16 23:35:36,150] multiqc [DEBUG ] No samples found: flexbar [2022-08-16 23:35:36,154] multiqc [DEBUG ] No samples found: kaiju [2022-08-16 23:35:36,159] multiqc [DEBUG ] No samples found: kraken [2022-08-16 23:35:36,163] multiqc [DEBUG ] No samples found: malt [2022-08-16 23:35:36,169] multiqc [DEBUG ] No samples found: trimmomatic [2022-08-16 23:35:36,174] multiqc [DEBUG ] No samples found: sickle [2022-08-16 23:35:36,179] multiqc [DEBUG ] No samples found: skewer [2022-08-16 23:35:36,183] multiqc [DEBUG ] No samples found: sortmerna [2022-08-16 23:35:36,187] multiqc [DEBUG ] No samples found: biobloomtools [2022-08-16 23:35:36,191] multiqc [DEBUG ] No samples found: fastq_screen [2022-08-16 23:35:36,197] multiqc [DEBUG ] No samples found: afterqc [2022-08-16 23:35:36,203] multiqc [DEBUG ] No samples found: fastp [2022-08-16 23:35:47,949] multiqc.modules.fastqc.fastqc [INFO ] Found 194 reports [2022-08-16 23:36:03,931] multiqc [DEBUG ] No samples found: pycoqc [2022-08-16 23:36:03,936] multiqc [DEBUG ] No samples found: minionqc [2022-08-16 23:36:03,940] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-08-16 23:36:03,944] multiqc [DEBUG ] No samples found: clusterflow [2022-08-16 23:36:03,949] multiqc [DEBUG ] No samples found: bcl2fastq [2022-08-16 23:36:03,953] multiqc [DEBUG ] No samples found: interop [2022-08-16 23:36:03,958] multiqc [DEBUG ] No samples found: ivar [2022-08-16 23:36:03,962] multiqc [DEBUG ] No samples found: flash [2022-08-16 23:36:03,966] multiqc [DEBUG ] No samples found: seqyclean [2022-08-16 23:36:03,966] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2022-08-16 23:36:03,967] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-08-16 23:36:03,967] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-08-16 23:36:03,967] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-08-16 23:36:04,188] multiqc [INFO ] Compressing plot data [2022-08-16 23:36:04,260] multiqc [INFO ] Report : multiqc_report.html [2022-08-16 23:36:04,260] multiqc [INFO ] Data : multiqc_data [2022-08-16 23:36:04,260] multiqc [DEBUG ] Moving data file from '/state/partition1/job-23602997/tmp3fni26qh/multiqc_data' to '/scratch/gencore/logs/html/HKCGLBGXM/merged/multiqc_data' [2022-08-16 23:36:04,392] multiqc [INFO ] MultiQC complete