HKCC7BGX2_n01_las34.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKCC7BGX2_n01_las34.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14684910
Sequences flagged as poor quality	0
Sequence length	75
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	266508	1.814842583304903	TruSeq Adapter, Index 14 (97% over 44bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	85192	0.5801329391872336	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	49684	0.3383337044626082	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAG	22721	0.15472345421252157	TruSeq Adapter, Index 14 (97% over 44bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	40000	63.6697	46
TATGCCG	39815	63.35899	48
GTATGCC	40295	63.27207	47
ATGCCGT	40085	62.903618	49
GCCGTCT	39425	62.88869	51
TGCCGTC	40220	62.59813	50
CGTATCT	41300	62.18815	39
CTCGTAT	40895	62.149734	44
TCGTATG	41015	62.119305	45
CCGTATC	42245	61.78527	38
GTATCTC	42185	60.744465	40
TCCGTAT	43440	60.530598	37
CCGTCTT	41190	60.34465	52
GTTCCGT	43530	59.952633	35
TATCTCG	43135	59.530155	41
AGTTCCG	43950	59.361984	34
TCTCGTA	43195	59.07946	43
TTCCGTA	44640	58.687016	36
CTGCTTG	38690	58.59851	59
GTCACAG	45535	58.399117	29