HKCC7BGX2_n01_las32.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKCC7BGX2_n01_las32.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23136877
Sequences flagged as poor quality	0
Sequence length	75
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	2487971	10.753270633716037	TruSeq Adapter, Index 12 (100% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAG	307215	1.3278153313431196	TruSeq Adapter, Index 12 (100% over 63bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29970	0.12953347160898163	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAATG	27630	0.11941974709897105	TruSeq Adapter, Index 12 (100% over 63bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	335055	66.95627	44
GTATGCC	335610	66.85274	45
TATGCCG	335485	66.82712	46
ATGCCGT	335190	66.81094	47
CTCGTAT	331890	66.75964	42
TCGTATG	335995	66.71629	43
TGCCGTC	334275	66.70601	48
CTGCTTG	330085	66.69016	57
GCCGTCT	333320	66.65174	49
CCTTGTA	335765	66.51217	33
AGTCACC	340800	66.45345	28
GTCACCT	339070	66.416176	29
CACCTTG	337900	66.328255	31
TGTAATC	333555	66.31681	36
CCGTCTT	335005	66.312515	50
GTAATCT	333890	66.31213	37
ACCTTGT	337365	66.29013	32
TCTCGTA	335105	66.191216	41
CCAGTCA	344450	66.143326	26
CAGTCAC	344875	66.135704	27