HKCC7BGX2_n01_las27.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKCC7BGX2_n01_las27.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15706356
Sequences flagged as poor quality	0
Sequence length	75
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	1763061	11.225143502413927	TruSeq Adapter, Index 5 (100% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAG	226212	1.440257689307437	TruSeq Adapter, Index 5 (100% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATGTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	57543	0.36636760302644356	TruSeq Adapter, Index 5 (98% over 63bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39697	0.2527448123549473	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	38815	0.24712925136804487	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAATG	17172	0.10933153431642577	TruSeq Adapter, Index 5 (100% over 63bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	242225	67.170815	42
CGTATGC	254175	67.15243	44
TCGTATG	252980	67.087585	43
GTATGCC	254950	67.068726	45
GCCGTCT	248895	67.00301	49
TATGCCG	254480	66.95785	46
ATGCCGT	253710	66.95166	47
TGCCGTC	251250	66.8918	48
CTGCTTG	245065	66.76993	57
CCGTCTT	250270	66.756195	50
TCTCGTA	244600	66.73179	41
GATCTCG	245865	66.65997	39
AGTGATC	247930	66.50553	36
ATCTCGT	246025	66.37543	40
GTGATCT	246910	66.31057	37
CACAGTG	261060	66.26269	33
TGCTTGA	247555	66.25441	58
CTTCTGC	249410	66.20701	54
TGATCTC	247135	66.188774	38
TCTGCTT	248845	66.088394	56