HKCC7BGX2_n01_las26.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HKCC7BGX2_n01_las26.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15101882
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	2009226	13.304474237052045	TruSeq Adapter, Index 3 (100% over 63bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	617468	4.088682456928216	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAG	250465	1.6585019006240413	TruSeq Adapter, Index 3 (100% over 63bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	229540	1.5199430110763679	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	22761	0.15071631469508237	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAATG	19970	0.13223517439746912	TruSeq Adapter, Index 3 (100% over 63bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	271450	67.56008	44
GCCGTCT	264980	67.50541	49
GTATGCC	272050	67.50365	45
CTCGTAT	269625	67.47847	42
TCGTATG	270910	67.46043	43
TATGCCG	271670	67.43679	46
TGCCGTC	267850	67.37976	48
ATGCCGT	270615	67.37461	47
AGGCATC	272380	67.2955	36
GGCATCT	270795	67.28553	37
CTGCTTG	262450	67.23582	57
CCGTCTT	266445	67.21711	50
GCATCTC	271290	67.096634	38
ACTTAGG	276635	67.07175	32
TCTCGTA	271860	67.04256	41
CATCTCG	271945	67.036514	39
CACTTAG	277275	67.028915	31
ATCTCGT	273060	66.83227	40
TGCTTGA	264390	66.82336	58
TTAGGCA	276690	66.771286	34