FastQCFastQC Report
Thu 10 Dec 2020
HK7MWAFX2_n02_1912_d04_rep2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK7MWAFX2_n02_1912_d04_rep2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1145
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGCATTTAGACGAGGGAAAATTTTGGAATTTCCTTTTGCCTGGGAG20.17467248908296942No Hit
GATATTCCCTGAAACCATTGATATGCAAAGGCTCTTAAGAATGTACTATG20.17467248908296942No Hit
CCTCCATTGCCACCACACCCCTCACCTCCATAGGCTTCACAGCCCCCCTT20.17467248908296942No Hit
CAGGTGGGGGTGGCAGTGATTTGGTAGCGGCGCTATCAAATGCTTTTTCT20.17467248908296942No Hit
GTATTATTTTTTCATTTACCTCAAAGTATTTCTGTGTTCCTATTTTGGTT20.17467248908296942No Hit
GCAGTGAGGAGGTCCACGTAGACCCCTCCAGGCACACGGTGGAGTTCCGA20.17467248908296942No Hit
GCCAGGTAGTATGTAGGCCATTTCCCAGTAGTGTGACCCCACTTTCCATA20.17467248908296942No Hit
TCCATTACCTCTACCTGCAGAACAACTTCATAACGGAGCTCCCCGTGGAG20.17467248908296942No Hit
CTTAAGAGCCTTTGCATATCAATGGTTTCAGGGAACATCTCTCTCATTTC20.17467248908296942No Hit
GCCATTTAGGAAAACAGGTGAAAGTTGGATTTATTCATTCAGTTAGTCAC20.17467248908296942No Hit
GGGTTGGGAGGTTGGGGTTCTGGGTGTGGGACGAGGAGTGGGGTAAGAGG20.17467248908296942No Hit
CTACAGCATTTTCCGTTCTTTCCAGGACCTCCGCAAGCCCTGCTCTGGAA20.17467248908296942No Hit
GCCCTCTACTGTGACAGCCGCAACCTCCGGAAGGTCCCTGTCATCCCCCC20.17467248908296942No Hit
GGGTGTATGTATGTACACAGTGTCCCTGTGATATGTGTGTATATGTGGGT20.17467248908296942No Hit
ATTTTATAGAGGTGGAAACCGAGGCGCAGAAAAGTGAAACAACTGACTTG20.17467248908296942No Hit
AACTTAGTCTTTGGTATTCTAGTTTCTTTCTATTTATCTCGCTCCCTGCT20.17467248908296942No Hit
GGCACAGGGTGTGGGGACCAGCCAGGCGGCAGAAGCACAGGTCGGGGTGG20.17467248908296942No Hit
CCCCATTTCTGTAAATCACAGAATCTGGGCTTGAAGGGTGGATTTCAAAT20.17467248908296942No Hit
GGAGAGTTCTGTGTGTATCTGTCAAGTCCATCCAAGTAAGGGGTTGTCTG20.17467248908296942No Hit
ACATAGCACCGTGTTCAACCTTGAGAATTTCTGGTAACAACTCATGGGCT20.17467248908296942No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)