FastQCFastQC Report
Thu 10 Dec 2020
HK7MWAFX2_n01_1967_d06_rep2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK7MWAFX2_n01_1967_d06_rep2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2220
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATACCACTGTGGTTGGAAAAGATGGTTGATTTGATTTCAGTCCTC50.22522522522522523No Hit
GGATATTGTGGGCCAGGTTGAGCTGCATGAGGTTCTTGAGGCCCTGGAAG40.18018018018018017No Hit
AAATTAATACAATGAAACAAAATTCACAGAATGCAGTAAAACAGGTTCTA30.13513513513513514No Hit
GTTCTGTCCTCTTGCCACAGCTTCCATGTGGGTCAGTGAAGGAGCGGAAC30.13513513513513514No Hit
GTTTTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTGGAATTGA30.13513513513513514No Hit
GAGCTTAAATAAGAAATCAAAAACTTCCAACAAGCAAAAGTCCAGGACCC30.13513513513513514No Hit
ATCTAAAATATCTCCCCATCCCATTACTCCCTGTCAAAGCCCTTTGTATC30.13513513513513514No Hit
GTCTCGATCCTGTTGCTGTCCAGGTAGAGCTGGTGAATGGCCGTGGGCAC30.13513513513513514No Hit
CTTTAATACCTCACACTTCTCTCAATGATCCCCCATCCAGACAGAAGATC30.13513513513513514No Hit
GGTTGGCACAGGGGCGAGCTGGGGATGTCCCAGGGCCGCCCACTCGGTCT30.13513513513513514No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)