FastQCFastQC Report
Thu 10 Dec 2020
HK7MWAFX2_n01_1911_d06_rep2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK7MWAFX2_n01_1911_d06_rep2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1802
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACG40.22197558268590456No Hit
TCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTT30.1664816870144284No Hit
GTCCTGCACTGTGCTGCCAGAGAATCTTCCGGAAGCAGCATTTTACCAGG20.11098779134295228No Hit
GAGTAGGCTGGAGCAAACGCGCCAGCGTCGCATCCGGCATTTATTCCGCA20.11098779134295228No Hit
TAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATG20.11098779134295228No Hit
CTGATAAACAGAATTTGCCTGGCGGCCTTAGCGCGGTGGTCCCACCTGAC20.11098779134295228No Hit
CTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA20.11098779134295228No Hit
GACTTGGACATGCATCCTTTCAGTCTATTTGACAAGAAAGCAAGTCATCA20.11098779134295228No Hit
GAATAAAGCCCTATGGTGGATGGCCTGATGTCTTACTGCTCCAAGAGCGG20.11098779134295228No Hit
TCCATATGCTGCCCACTTAACAACATAAACCCAACCGGCCGATCCCGCTC20.11098779134295228No Hit
GCTATCTGGCTTCTTCTTTTGGCACCTGCCACCCACAGCCATGTGGAAGG20.11098779134295228No Hit
CATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTA20.11098779134295228No Hit
GTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCC20.11098779134295228No Hit
GTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACATCTTCGGCGTTGT20.11098779134295228No Hit
ATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACATCTTCGGCG20.11098779134295228No Hit
CTTTAGAAGAAGTGGATTAAAATTAATTTCATTAGGAGACTTTCACAGCA20.11098779134295228No Hit
GTGTGTGTGTGTTTGTGTGTCAAATAAATATTTTTTAAATCATAAAAATT20.11098779134295228No Hit
GAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGT20.11098779134295228No Hit
GTCCTGGAACAGTGATGTATGGCTGGTGATAGATCATGTTGGGTTTCCGG20.11098779134295228No Hit
GATATAGACATTTATTCATCGATTCAGCCAGTATTTACTGGGTTCTTGTC20.11098779134295228No Hit
ATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGT20.11098779134295228No Hit
TAATAATGCTGATCGCCTAGGGTGTTGCCAGGATTCAAGGAGCACCTTGA20.11098779134295228No Hit
GTTGAAGCCTCAACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGA20.11098779134295228No Hit
CTTCAAGGCAGAGCAGATAGCAAGATCCTTAGGAGTGTCCTGATTTCTGA20.11098779134295228No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)