FastQCFastQC Report
Thu 11 Oct 2018
HK77CBCX2_l02_n02_MG_7379.tr2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK77CBCX2_l02_n02_MG_7379.tr2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGATTATTTCCTCTCTCATAACCATCTTCTGGCACACCATCAACTAAC116.666666666666664No Hit
GTGTGAAGAAAGGTGGAATCTCAAAATTATGCCATATTGAGAAGTATCCT116.666666666666664No Hit
TGGCCCCACGCATGGAGGCCGTAGATATAACAAGTACACCGAGGCACACA116.666666666666664No Hit
TGCCACTTTAGACTTTTCATAGAAAATCAGACCGATCCCCCGTTATCCCC116.666666666666664No Hit
AGATTATACTGGATAGCTAGATTACACTTCACTTAGGAGGTAACCTTTAA116.666666666666664No Hit
GGGTCAAGCTAACTTTTTTTTTTTTTTTTGACACGTTGTCTCCCTCTGTC116.666666666666664No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)