FastQCFastQC Report
Wed 13 Apr 2016
HK72VBGXX_n01_nlp7_chip_pchx_input_5_rep3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK72VBGXX_n01_nlp7_chip_pchx_input_5_rep3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11394139
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC11200.018.74898348
ATGCCGT11600.018.1023947
TATGCCG12300.017.64132146
CGTATGC12600.017.4991344
GTATGCC13250.016.37654345
GCCGTCT14050.015.19490749
GCGGCCT33350.011.44021711
CCTGCGT34250.011.24056265
AACGCGG34800.010.8632458
GCGTTAT36850.010.82775968
CGGCCTT37050.010.39203212
GCTGGCC38050.010.11780639
TCCTGGC39450.010.11365427
TGCGTTA41600.09.75960167
CCGTCTT23700.09.45104850
CGCGGCC44400.09.06609710
TCTCGTA27000.08.94403841
GTCACAC26450.08.73329329
TTACGGT49450.08.35152820
CCTGGCC50450.07.97797428
Produced by FastQC (version 0.11.2)