FastQCFastQC Report
Wed 13 Apr 2016
HK72VBGXX_n01_nlp7_chip_pchx_input_30_rep3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK72VBGXX_n01_nlp7_chip_pchx_input_30_rep3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13478901
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG13500.017.8879646
CGTATGC14500.017.13723244
GTATGCC15050.016.51095445
ATGCCGT16200.015.3387147
GCCGTCT17550.013.95964849
GCGGCCT35350.013.66478511
TGCCGTC17700.013.64351148
AACGCGG38600.013.058698
CCTGCGT37800.012.9625865
GCTGGCC39800.012.22307439
CGGCCTT40550.011.91210612
GCGTTAT41200.011.63826368
CGCGGCC44000.011.29683710
TCCTGGC42050.011.23608127
TGCGTTA47350.010.42227167
TCCTGCG53200.09.80226864
ACGCGGC51100.09.6589329
CCTGGCC51650.09.62224528
AGCAACG55450.08.9641935
TTCCTGG56950.08.72653326
Produced by FastQC (version 0.11.2)