HK72VBGXX_n01_nlp7_chip_pchx_5_rep3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK72VBGXX_n01_nlp7_chip_pchx_5_rep3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11841366
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	42736	0.36090430783070127	TruSeq Adapter, Index 2 (100% over 50bp)
CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTG	41367	0.3493431416611901	No Hit
ACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTT	25221	0.21299062962837229	No Hit
CCCCCACCCACGAGGAGCATCGTGGAAAAAGAAGACGTTCCAACCACGTC	17073	0.1441810007392728	No Hit
CCCACGAGGAGCATCGTGGAAAAAGAAGACGTTCCAACCACGTCTTCAAA	14056	0.11870252131384167	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATGCCGT	5150	61.908546	47
TATGCCG	5155	61.848503	46
GTATGCC	5165	61.594013	45
TGCCGTC	5195	61.304916	48
CGTATGC	5225	60.88671	44
GCCGTCT	5240	60.778698	49
CCGTCTT	5450	58.629417	50
TCTCGTA	5580	57.07582	41
ATCTCGT	5685	56.02165	40
GCTTGAA	6050	52.815376	59
TGCTTGA	6205	51.326847	58
CCGATGT	7175	44.439102	33
ACCGATG	7550	42.1855	32
CTGCTTG	8415	38.637283	57
TATCTCG	8420	38.489643	39
TCACCGA	8485	37.494854	30
TTCTGCT	8740	36.84015	55
GTCACCG	8820	36.030437	29
CGATGTA	8885	35.96517	34
TCTGCTT	9275	34.752575	56