HK72VBGXX_n01_nlp7_chip_pchx_10_rep3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK72VBGXX_n01_nlp7_chip_pchx_10_rep3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8192238
Sequences flagged as poor quality	0
Sequence length	76
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC	24696	0.30145608562641857	TruSeq Adapter, Index 3 (100% over 50bp)
CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTG	14642	0.17873015896266686	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10642	0.12990345251199978	No Hit
ACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTT	9335	0.1139493261792443	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	3325	53.260483	46
ATGCCGT	3460	51.38408	47
GCCGTCT	3530	50.464893	49
CGTATGC	3600	49.19378	44
TGCCGTC	3610	49.15236	48
GTATGCC	3605	49.12555	45
CCGTCTT	4135	43.335983	50
TCTCGTA	4145	42.81004	41
CATCTCG	4630	38.401207	39
ATCTCGT	4670	38.222183	40
TAGGCAT	4920	36.066147	35
CTCGTAT	5240	34.531975	42
CTGCTTG	5530	33.226185	57
TCGTATG	5590	32.68292	43
GCATCTC	5710	31.259949	38
TGCTTGA	5935	30.133284	58
GCTTGAA	6020	29.88204	59
TGGGGGG	785	29.444324	1
CACTTAG	6585	27.213163	31
TTAGGCA	6705	27.039158	34