HK72VBGXX_n01_nlp7_chip_pchx_0_rep3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK72VBGXX_n01_nlp7_chip_pchx_0_rep3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8861624
Sequences flagged as poor quality	0
Sequence length	76
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTG	23168	0.26144192080368117	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	18577	0.20963426116928455	TruSeq Adapter, Index 1 (100% over 50bp)
ACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTT	15059	0.16993499159973388	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2555	56.024467	46
GCCGTCT	2615	54.47196	49
TGCCGTC	2705	52.78867	48
ATGCCGT	2710	52.56183	47
GTATGCC	2760	51.7373	45
CGTATGC	2760	51.610497	44
CCGTCTT	3330	42.88161	50
TCTCGTA	3450	40.679955	41
CACGATC	3780	37.406086	36
ATCTCGT	3790	37.307602	40
TCACGAT	3835	37.05215	35
CTGCTTG	4970	29.435247	57
CTCGTAT	5105	29.274351	42
TGCTTGA	4970	29.153572	58
GCTTGAA	5055	28.524723	59
TCGTATG	5435	27.947496	43
TGGGGGG	635	27.57722	1
TTCTGCT	6310	23.018335	55
CCTGCGT	7345	22.776726	65
GCGGCCT	7590	22.31994	11