HK72VBGXX_n01_nlp7_4tu_180_b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK72VBGXX_n01_nlp7_4tu_180_b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6444453
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT	102618	1.5923461618852677	TruSeq Adapter, Index 19 (97% over 40bp)
CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTG	17099	0.2653289580977625	No Hit
ACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTT	13617	0.2112979953457648	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9368	0.14536532425637988	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	11740	63.348003	47
GCCGTCT	11785	63.13826	51
TATGCCG	11795	63.023922	48
CGTATGC	11815	62.94588	46
ATGCCGT	11850	62.76094	49
TGCCGTC	11910	62.44622	50
CCGTCTT	12205	61.051563	52
TCTCGTA	12165	60.76321	43
ATCTCGT	12465	59.16041	42
GCTTGAA	13230	56.39831	61
TGCTTGA	13260	56.323498	60
CTGCTTG	13285	56.006756	59
AAACGAT	13520	54.85462	37
CTCGTAT	13680	54.212204	44
TCGTATG	13915	53.573322	45
CGTGAAA	13935	53.29675	33
TTCTGCT	14235	52.71158	57
GTGAAAC	14160	52.351814	34
CACGTGA	14225	52.259415	31
GAAACGA	14360	51.645855	36