FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_combined_n02_ntr_7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_combined_n02_ntr_7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length36
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAAGGAGTAAATACAACTAGATTTGTGAGTGTGT111.11111111111111No Hit
TGCCTACAGTGGTTGATATTGCCAGCCTCATTTTGC111.11111111111111No Hit
AATCCAGTACAGGCCAATTGCGAATCGTTTAAGGGA111.11111111111111No Hit
TTGTTACACACTCCTTAGCGGATTCCGACTTCCATG111.11111111111111No Hit
ACCCAAATTCGACGATCGATTTGCACGTCAGAACCG111.11111111111111No Hit
ATTCGCCAGACTCCTCTGAGTCGGAGGTTAGCGCAG111.11111111111111No Hit
CTTCCCAGCAGGTCTCTAGTTGCATATGGATAGCGT111.11111111111111No Hit
CGTAAGATGAGTAGTTCCTTCCTCAATTCTTCTTTC111.11111111111111No Hit
CCTATTCCCTCTTGCTAGAAGATACTTATTGAGTTT111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)