FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_combined_n02_ntr_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_combined_n02_ntr_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length36
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCAATTTAGACCAGTTCAATGGACGATGGGTGTA17.6923076923076925No Hit
GGGAGATCCAAATGCAACAGCAACGCCTGCTGCAGC17.6923076923076925No Hit
CCTTTTATCAGACACGGACAATTTTAAGTGCTTTCT17.6923076923076925No Hit
TGGGAATTGGTTGTTTGGATCGTCAAGGTTGACATT17.6923076923076925No Hit
TACTTGTATTACGGCGGTTATTTCACAAAATACTCA17.6923076923076925No Hit
GACCCAATGTATCTGGCAGAGTAAGGCTTTCCCTTT17.6923076923076925No Hit
CTCTTGTTTGAAAGCATTTATGTTGGAAGACAGAGT17.6923076923076925No Hit
CTTCTATAGACTACCTTACGCATTCTTGCGTTCGGA17.6923076923076925No Hit
ATCCGGGGTCTTCCAACTCCTTAGATGCCATACTAG17.6923076923076925No Hit
ATTTATTGGCACTGTCCATGACTACCAATTCGTTAT17.6923076923076925No Hit
CTATAATTTGGAGGAAATTCTGGATTAACTGAGGAA17.6923076923076925No Hit
TGATAGACAACAATGCCATCCAATATGATAGCAGTG17.6923076923076925No Hit
GATCTAAGTTGGATGACGAAGACAAGGAAACTTTGG17.6923076923076925No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)