FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_combined_n01_ntr_11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_combined_n01_ntr_11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length36
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAATATCCAGTACGGGTGGTACCAACAACAAAACT13.7037037037037033No Hit
TAATAATATCGACCTCCTCCTACCTACCTATCTACC13.7037037037037033No Hit
GTCCAATATACTTTGGATCCCTCCATGGACCGATAT13.7037037037037033No Hit
TATTCATACATTGAATAACGCAGTTCTTGAGTTAGG13.7037037037037033No Hit
GGGTACGGCCCATTCTGTGGAGGTGGTACTGAAGCA13.7037037037037033No Hit
GTATATAACGAAATATGGTGGTTCTTTATTTATCAC13.7037037037037033No Hit
AAACTCGACCTCTACATTTTTTATGTTTATCTCTAG13.7037037037037033No Hit
ATGCACAGTTTCTCTAGAAGTTGAAGCGGACAATGA13.7037037037037033No Hit
GTATATGATTGTACATCTGTTAAGTATATAATATGC13.7037037037037033No Hit
TAATTACAGTATCGTTCGTCCCGACTTGGCATTAGT13.7037037037037033No Hit
GTATAAGCAATTTATACAGTGAAACTGCGAATGGCT13.7037037037037033No Hit
GATTTTATTATTGATACAAAGCGCTATGAAGATCAA13.7037037037037033No Hit
GGCTGAAAGCTTATTTAAAAATCACTAATGAAATAA13.7037037037037033No Hit
AAATAAATACAATGGTATCGATAACGGTAAAATTCT13.7037037037037033No Hit
TCTTTAGGAGTTACTACAGGGTGTAGCTTGGCGTAT13.7037037037037033No Hit
GGTCCTGATGTATTGTATGATCGAATGTTGTAATTT13.7037037037037033No Hit
TAATTCACCTACTGGCTACTATTGCGTTCCACATTT13.7037037037037033No Hit
CTCAATAGCTGAGTTCTTCCTAAACGAGTAAAATCA13.7037037037037033No Hit
GTATCGCATCCACTAGCGGAATATGTTCACCTATAG13.7037037037037033No Hit
GCCTACAAGGGCATGCACGAAAAGCCTCATACGGAT13.7037037037037033No Hit
GATACAACCTCGATAGTGCTTTCTTTGTCCCATTTT13.7037037037037033No Hit
TCTTAGGCCTGTAGAATGAGGCAGTAGCACATTCTT13.7037037037037033No Hit
TATTAAGATCAATAGGCACGTGCTATTTTCGAACAT13.7037037037037033No Hit
CTGAAATCTACCTCCAATTGTGTACGGACTATTATT13.7037037037037033No Hit
GGTTACTAATGGGCAAGAAGAAGAGTAAGAACCAAT13.7037037037037033No Hit
CTCCATATGTGTGAATTATTTTGTCCGGCGTCTTGT13.7037037037037033No Hit
ATGAAGAACATGCGTATATATACAATACCTTCCAAG13.7037037037037033No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)