FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_combined_n01_ntr_10.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_combined_n01_ntr_10.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7
Sequences flagged as poor quality0
Sequence length36
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCCAGATAGAGTTGCCCTTTCCAAGGCAATACAA114.285714285714285No Hit
AGAAACACAGAACTCAACTTCAGGACCTTTAGTGAT114.285714285714285No Hit
ACGGAAGGCCGTTAGTGACAAAACTAGAGGATGCAG114.285714285714285No Hit
CACCAACTCTTTGTAAAGAAACAAATCGGGATTCAA114.285714285714285No Hit
CCTCATCCTCTTCCATCGAAAGCTCTCCAAAGTTAA114.285714285714285No Hit
TTCCAGCATAGTCTCATTTTAGCAATACTTATTTTT114.285714285714285No Hit
AGGAAGAAGTGAATGAAATTGCTAGGCAAAGAGAAT114.285714285714285No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)