FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_l04n01_ntr_11.35100000038924.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_l04n01_ntr_11.35100000038924.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length36
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAATATCCAGTACGGGTGGTACCAACAACAAAACT111.11111111111111No Hit
GTATATAACGAAATATGGTGGTTCTTTATTTATCAC111.11111111111111No Hit
TAATAATATCGACCTCCTCCTACCTACCTATCTACC111.11111111111111No Hit
GCCTACAAGGGCATGCACGAAAAGCCTCATACGGAT111.11111111111111No Hit
TCTTTAGGAGTTACTACAGGGTGTAGCTTGGCGTAT111.11111111111111No Hit
GTATAAGCAATTTATACAGTGAAACTGCGAATGGCT111.11111111111111No Hit
GGTTACTAATGGGCAAGAAGAAGAGTAAGAACCAAT111.11111111111111No Hit
GGGTACGGCCCATTCTGTGGAGGTGGTACTGAAGCA111.11111111111111No Hit
TAATTCACCTACTGGCTACTATTGCGTTCCACATTT111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)