FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_l03n01_ntr_82.35100000039ab3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_l03n01_ntr_82.35100000039ab3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177957
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACAG500.001103550818.0040475
TATACTG550.002089122516.3673155
GACAGCA550.002093051816.3627177
GTATTAT901.5633537E-515.0033721
AATACTG600.003731749515.0033725
TTCTATA650.006348661613.8492662
AATATAG650.006348661613.8492665
TATATCT850.002592944812.3557195
ATATTGG1100.001419723810.9115441
TAACATA1000.00871369710.5023614
TTATATT1350.0077304358.8908874
Produced by FastQC (version 0.11.2)