FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_l02n02_ntr_82.35200000039acd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_l02n02_ntr_82.35200000039acd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166465
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4220.25350674315922267No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAT400.00648917418.7492493
CATATAC550.002092060616.362983
TAATATA706.000332E-414.9993994
ATAATAT1056.685119E-512.8566273
Produced by FastQC (version 0.11.2)