FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_l01n01_ntr_69.35100000039780.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_l01n01_ntr_69.35100000039780.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96372
Sequences flagged as poor quality0
Sequence length36
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTATT200.0051137530.0124634
GACACAC400.006472175518.74805512
CACACCC400.006472175518.74805514
TTACACC755.5159766E-516.0066454
CCCTTAC705.9472147E-415.0062311
CTTACAC650.00631282413.8519053
TACACCA1151.063882E-513.0488965
Produced by FastQC (version 0.11.2)