FastQCFastQC Report
Tue 3 Nov 2015
HK5NHBGXX_l01n01_ntr_5.35100000038740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK5NHBGXX_l01n01_ntr_5.35100000038740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length36
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAATAGAGTAGTTGAAACTAGATATCAATTGCACA111.11111111111111No Hit
GAATTATACAAAGTGTCTGTAGCATTAGGTTTAACG111.11111111111111No Hit
ATAATATATTATTGCTGATGGAATATTCTTCAACGT111.11111111111111No Hit
GTTTTGCGGATTACTGCTGGAACGGCACACTAAGTA111.11111111111111No Hit
GCCAAGGACTTCAAAAATTCGTCATGGTCCTGCTTT111.11111111111111No Hit
GGACACTGATTACTTAAAAAATATAGACGGATTCAT111.11111111111111No Hit
AGTATGGGCTTTCGTTCACTGACGAGTACGGTGACC111.11111111111111No Hit
GCTTAGGTGATAGCGGTAAAGTCAACCCGAAGTTTG111.11111111111111No Hit
AGACAAATCACTCCACCAACTAAGAACGGCCATGCC111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)