FastQCFastQC Report
Sat 1 May 2021
HK3VMBGXH_n02_S8_R1_H10_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3VMBGXH_n02_S8_R1_H10_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1577321
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAAATGCTGCTTATTCAAAATCCTAAAACAGCTTTGAAGAAAATTTGA27980.17738938364480025No Hit
GTATTACAGGTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAAACATT19430.12318354982910898No Hit
CTATCATGTTACTCTGTATCCTCTTTCACCTACAGATCTCAAAATCTTGC17980.11399074760305605No Hit
GCTCTATACCCAGCATGGGGCTTGAACTTAACCCTGAGATCAAGAATCAC17880.11335676124263863No Hit
GTACATAAGAATGCAACCTTTCTCGGAAACAAGGTCACTGAGGATATAAT16300.10333977674804305No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)