FastQCFastQC Report
Sat 1 May 2021
HK3VMBGXH_n01_S8_R1_A11_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3VMBGXH_n01_S8_R1_A11_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1657396
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTACAGGTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAAACATT135050.8148324238745598No Hit
TAGTATTACAGGTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAAACA48280.2913003289497501No Hit
GCCTTATAAACCATGTTAAGAATCCAGACTTTATCCTATTAAAGGTGACA44270.2671057490183396No Hit
GTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAAACATTCCTTTTTGT39170.2363345875095632No Hit
ATATAGTATTACAGGTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAA31280.18872979058716205No Hit
GTGATAAGGTGTAGGAAATTCAAGTCACGTGTTAAACGGAATGATTCTAG26470.15970836179162975No Hit
GATTATACTTGTGCTATGAAGGAAATTAAGTGGAGAGAGCTGAAACTGGG25120.15156305433342424No Hit
ATTAAAGGTGACAGGACTCAGGGAAAGGGAATGTTTTTGAAAGATTATAC24310.14667586985850092No Hit
TATTAAAGGTGACAGGACTCAGGGAAAGGGAATGTTTTTGAAAGATTATA23760.1433574112644172No Hit
CTTATAAACCATGTTAAGAATCCAGACTTTATCCTATTAAAGGTGACAGG22360.13491042575220408No Hit
GTGAAAAGCAAACTGCCTTATAAACCATGTTAAGAATCCAGACTTTATCC20300.12248128992709045No Hit
CAGGTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAAACATTCCTTTT19790.11940417377621282No Hit
GTGTTAATATGTTGAGGGGGAGAGAAATACAACAGACAGTGATAAGGTGT19720.11898182450060216No Hit
GGTATAGTTCTTCTTTTTTTCTGCTTTGTCTCTGCAAACATTCCTTTTTG19430.117232091787358No Hit
GTTAAAAACAGGCACATGATGGAAATAAACCATTGAGACAAGATCCAAAA18260.11017282532357989No Hit
CTATTAAAGGTGACAGGACTCAGGGAAAGGGAATGTTTTTGAAAGATTAT18120.10932812677235856No Hit
GTCCTAGATAAAGGTTATTTATGGGGAAGAGCATAAAGAAAGGGAATGAT17870.10781973650232052No Hit
AGATAGTGCTCTGAGGCAAGCAGGAGACAGACTGTGAAAAGCAAACTGCC16840.1016051685897637No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)