Sample adapter_content Sequences flagged as poor quality sequence_duplication_levels avg_sequence_length Encoding kmer_content per_base_sequence_quality sequence_length_distribution Sequence length File type basic_statistics per_sequence_gc_content Total Sequences per_base_n_content per_base_sequence_content overrepresented_sequences %GC total_deduplicated_percentage Filename per_tile_sequence_quality per_sequence_quality_scores HK3TCAFX2_n01_Federica.A7 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 502401.0 pass fail pass 39.0 94.5968521318 HK3TCAFX2_n01_Federica.A7.fastq.gz pass warn HK3TCAFX2_n01_Federica.CSS_parent fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass pass 6562032.0 pass fail pass 42.0 82.4612981001 HK3TCAFX2_n01_Federica.CSS_parent.fastq.gz pass warn HK3TCAFX2_n01_Federica.F1 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 530256.0 pass fail warn 38.0 90.6531390494 HK3TCAFX2_n01_Federica.F1.fastq.gz pass warn HK3TCAFX2_n01_Federica.Oak fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass pass 201941.0 pass fail pass 39.0 97.5237327939 HK3TCAFX2_n01_Federica.Oak.fastq.gz pass warn HK3TCAFX2_n01_Federica.Wine fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass pass 264121.0 pass fail pass 40.0 96.5857923722 HK3TCAFX2_n01_Federica.Wine.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A12 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 869402.0 pass fail pass 39.0 89.1480451012 HK3TCAFX2_n01_msh3_MA_strain_A12.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A13 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass pass 874886.0 pass fail pass 40.0 89.4331815253 HK3TCAFX2_n01_msh3_MA_strain_A13.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A14 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 965375.0 pass fail warn 39.0 82.3082659327 HK3TCAFX2_n01_msh3_MA_strain_A14.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A15 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 613094.0 pass fail pass 40.0 87.9118155467 HK3TCAFX2_n01_msh3_MA_strain_A15.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A16 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 3057656.0 pass fail pass 38.0 78.6378746544 HK3TCAFX2_n01_msh3_MA_strain_A16.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A18 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass pass 1319263.0 pass fail pass 36.0 83.6021645252 HK3TCAFX2_n01_msh3_MA_strain_A18.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A19 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1684595.0 pass fail pass 38.0 82.1710006522 HK3TCAFX2_n01_msh3_MA_strain_A19.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A20 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1727853.0 pass fail pass 37.0 80.9562411711 HK3TCAFX2_n01_msh3_MA_strain_A20.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A21 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 947918.0 pass fail pass 39.0 88.7147813462 HK3TCAFX2_n01_msh3_MA_strain_A21.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A22 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 805431.0 pass fail pass 39.0 86.7083829132 HK3TCAFX2_n01_msh3_MA_strain_A22.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A23 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 853087.0 pass fail pass 38.0 86.6851680909 HK3TCAFX2_n01_msh3_MA_strain_A23.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A24 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 693304.0 pass fail pass 40.0 88.0349355966 HK3TCAFX2_n01_msh3_MA_strain_A24.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A25 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 3295251.0 pass fail pass 38.0 80.0478415699 HK3TCAFX2_n01_msh3_MA_strain_A25.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A26 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1077783.0 pass fail pass 37.0 84.8827055172 HK3TCAFX2_n01_msh3_MA_strain_A26.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A27 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1545259.0 pass fail pass 37.0 82.003872298 HK3TCAFX2_n01_msh3_MA_strain_A27.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A28 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 772969.0 pass fail pass 39.0 87.3397157019 HK3TCAFX2_n01_msh3_MA_strain_A28.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A29 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1142564.0 pass fail pass 37.0 86.1522777927 HK3TCAFX2_n01_msh3_MA_strain_A29.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A30 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 641427.0 pass fail pass 37.0 84.1516250988 HK3TCAFX2_n01_msh3_MA_strain_A30.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A31 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1304908.0 pass fail pass 38.0 85.3516810674 HK3TCAFX2_n01_msh3_MA_strain_A31.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A32 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 585667.0 pass fail pass 38.0 84.60887779 HK3TCAFX2_n01_msh3_MA_strain_A32.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A33 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 2477208.0 pass fail pass 37.0 78.9669010813 HK3TCAFX2_n01_msh3_MA_strain_A33.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A34 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1408771.0 pass fail pass 38.0 86.8311534273 HK3TCAFX2_n01_msh3_MA_strain_A34.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A35 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1399939.0 pass fail pass 36.0 81.2165667394 HK3TCAFX2_n01_msh3_MA_strain_A35.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_A36 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1773658.0 pass fail pass 38.0 83.1093157779 HK3TCAFX2_n01_msh3_MA_strain_A36.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_C3 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 530633.0 pass fail pass 39.0 88.4644692455 HK3TCAFX2_n01_msh3_MA_strain_C3.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_C4 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 566521.0 pass fail pass 38.0 85.8870004932 HK3TCAFX2_n01_msh3_MA_strain_C4.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_C5 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1086313.0 pass fail pass 37.0 83.169744041 HK3TCAFX2_n01_msh3_MA_strain_C5.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_s.060.3 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 415258.0 pass fail pass 39.0 89.6981311637 HK3TCAFX2_n01_msh3_MA_strain_s.060.3.fastq.gz pass warn HK3TCAFX2_n01_msh3_MA_strain_s.061.2 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1770027.0 pass fail pass 36.0 81.4273121322 HK3TCAFX2_n01_msh3_MA_strain_s.061.2.fastq.gz pass warn HK3TCAFX2_n01_undetermined warn 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 9469791.0 pass fail pass 40.0 94.1751746453 HK3TCAFX2_n01_undetermined.fastq.gz pass warn HK3TCAFX2_n02_Federica.A7 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 502401.0 warn fail pass 37.0 94.8111112736 HK3TCAFX2_n02_Federica.A7.fastq.gz fail warn HK3TCAFX2_n02_Federica.CSS_parent fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 6562032.0 warn fail pass 38.0 81.5657466631 HK3TCAFX2_n02_Federica.CSS_parent.fastq.gz fail pass HK3TCAFX2_n02_Federica.F1 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 530256.0 warn fail pass 36.0 89.8044493836 HK3TCAFX2_n02_Federica.F1.fastq.gz fail warn HK3TCAFX2_n02_Federica.Oak fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 201941.0 warn fail pass 37.0 97.4833561931 HK3TCAFX2_n02_Federica.Oak.fastq.gz fail warn HK3TCAFX2_n02_Federica.Wine fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 264121.0 warn fail pass 37.0 96.7738851422 HK3TCAFX2_n02_Federica.Wine.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A12 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 869402.0 warn fail pass 36.0 88.3687467803 HK3TCAFX2_n02_msh3_MA_strain_A12.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A13 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 874886.0 warn fail pass 38.0 89.2928350605 HK3TCAFX2_n02_msh3_MA_strain_A13.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A14 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 965375.0 warn fail warn 37.0 82.3224165757 HK3TCAFX2_n02_msh3_MA_strain_A14.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A15 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 613094.0 warn fail pass 37.0 86.9117279984 HK3TCAFX2_n02_msh3_MA_strain_A15.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A16 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 3057656.0 warn fail pass 36.0 78.1661353571 HK3TCAFX2_n02_msh3_MA_strain_A16.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A18 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 1319263.0 warn fail pass 35.0 82.6598288573 HK3TCAFX2_n02_msh3_MA_strain_A18.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A19 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1684595.0 warn fail pass 36.0 81.0803113695 HK3TCAFX2_n02_msh3_MA_strain_A19.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A20 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1727853.0 warn fail pass 35.0 80.5901679201 HK3TCAFX2_n02_msh3_MA_strain_A20.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A21 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 947918.0 warn fail pass 36.0 87.4097492198 HK3TCAFX2_n02_msh3_MA_strain_A21.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A22 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 805431.0 warn fail pass 37.0 85.667200566 HK3TCAFX2_n02_msh3_MA_strain_A22.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A23 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 853087.0 warn fail pass 36.0 85.9309015243 HK3TCAFX2_n02_msh3_MA_strain_A23.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A24 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 693304.0 warn fail pass 37.0 86.4390109172 HK3TCAFX2_n02_msh3_MA_strain_A24.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A25 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 3295251.0 warn fail pass 36.0 78.7639685846 HK3TCAFX2_n02_msh3_MA_strain_A25.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A26 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1077783.0 warn fail pass 35.0 83.0197793555 HK3TCAFX2_n02_msh3_MA_strain_A26.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A27 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1545259.0 warn fail pass 35.0 79.6622951829 HK3TCAFX2_n02_msh3_MA_strain_A27.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A28 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 772969.0 warn fail pass 36.0 83.5436679907 HK3TCAFX2_n02_msh3_MA_strain_A28.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A29 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1142564.0 warn fail pass 35.0 83.9473781275 HK3TCAFX2_n02_msh3_MA_strain_A29.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A30 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 641427.0 warn fail pass 35.0 82.481459016 HK3TCAFX2_n02_msh3_MA_strain_A30.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A31 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1304908.0 warn fail pass 36.0 83.7335283225 HK3TCAFX2_n02_msh3_MA_strain_A31.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A32 fail 0.0 pass 151.0 Sanger / Illumina 1.9 warn fail pass 151.0 Conventional base calls pass warn 585667.0 warn fail pass 35.0 82.1283517625 HK3TCAFX2_n02_msh3_MA_strain_A32.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A33 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 2477208.0 warn fail pass 35.0 75.7179875976 HK3TCAFX2_n02_msh3_MA_strain_A33.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A34 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1408771.0 warn fail pass 36.0 84.8379646246 HK3TCAFX2_n02_msh3_MA_strain_A34.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A35 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1399939.0 warn fail pass 35.0 78.3990846694 HK3TCAFX2_n02_msh3_MA_strain_A35.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_A36 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1773658.0 warn fail pass 36.0 80.7604136147 HK3TCAFX2_n02_msh3_MA_strain_A36.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_C3 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 530633.0 warn fail pass 36.0 88.6008460526 HK3TCAFX2_n02_msh3_MA_strain_C3.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_C4 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 566521.0 warn fail pass 36.0 86.2729993178 HK3TCAFX2_n02_msh3_MA_strain_C4.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_C5 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1086313.0 warn fail pass 35.0 84.0574863919 HK3TCAFX2_n02_msh3_MA_strain_C5.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_s.060.3 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 415258.0 warn fail pass 36.0 89.7518070668 HK3TCAFX2_n02_msh3_MA_strain_s.060.3.fastq.gz fail warn HK3TCAFX2_n02_msh3_MA_strain_s.061.2 fail 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 1770027.0 warn fail pass 34.0 81.5667946194 HK3TCAFX2_n02_msh3_MA_strain_s.061.2.fastq.gz fail warn HK3TCAFX2_n02_undetermined warn 0.0 pass 151.0 Sanger / Illumina 1.9 fail fail pass 151.0 Conventional base calls pass warn 9469791.0 warn fail warn 38.0 94.5266773282 HK3TCAFX2_n02_undetermined.fastq.gz fail fail