[2023-08-11 04:51:26,591] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-08-11 04:51:26,591] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-08-11 04:51:26,591] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-08-11 04:51:26,593] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-08-11 04:51:26,593] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-08-11 04:51:26,594] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HK3JJBGXT/merged [2023-08-11 04:51:26,756] multiqc [WARNING] MultiQC Version v1.15 now available! [2023-08-11 04:51:26,756] multiqc [INFO ] This is MultiQC v1.9 [2023-08-11 04:51:26,756] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HK3JJBGXT/merged [2023-08-11 04:51:26,756] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HK3JJBGXT/merged [2023-08-11 04:51:26,756] multiqc [INFO ] Template : default [2023-08-11 04:51:26,756] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-08-11 04:51:26,756] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HK3JJBGXT/merged [2023-08-11 04:51:26,756] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-08-11 04:51:26,756] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-36366522/tmpd96zds3g [2023-08-11 04:51:26,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_CviAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:26,864] multiqc [DEBUG ] File ignored by longranger/invocation 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File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_LerAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:27,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_LerAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:27,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP26_ShaAmpPoolHm-B_ad5_fastqc.html [2023-08-11 04:51:27,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP26_ShaAmpPoolHm-B_ad5_fastqc.html [2023-08-11 04:51:27,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP56_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:27,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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04:51:29,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_LerAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:29,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_LerAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:29,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP21_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:29,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP21_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:29,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_EriAmpPoolHm-input_ad3_fastqc.html [2023-08-11 04:51:29,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP16_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP16_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_C24AmpPoolHm-input_ad4_fastqc.html [2023-08-11 04:51:32,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_C24AmpPoolHm-input_ad4_fastqc.html [2023-08-11 04:51:32,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_LerAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:32,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_LerAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:32,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP39_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:32,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP39_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:32,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP13_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:32,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP13_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:32,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_KyoAmpPoolHm-input_ad3_fastqc.html [2023-08-11 04:51:32,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_KyoAmpPoolHm-input_ad3_fastqc.html [2023-08-11 04:51:32,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_KyoAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:32,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_KyoAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:32,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP62_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP62_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP6_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:32,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP6_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:32,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ColAmpPoolHm-input_ad3_fastqc.html [2023-08-11 04:51:32,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ColAmpPoolHm-input_ad3_fastqc.html [2023-08-11 04:51:32,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_EriAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:32,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_EriAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:32,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP31_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP31_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ColAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:32,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ColAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:32,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_EriAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:32,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_EriAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:32,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_CviAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:32,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_CviAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:32,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:32,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:32,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_C24AmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:32,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_C24AmpPoolHm-input_ad7_fastqc.html [2023-08-11 04:51:32,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ColAmpPoolHm-input_ad1_fastqc.html [2023-08-11 04:51:32,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ColAmpPoolHm-input_ad1_fastqc.html [2023-08-11 04:51:32,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP28_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:32,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP28_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:33,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad2_fastqc.html [2023-08-11 04:51:33,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP19_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP19_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad1_fastqc.html [2023-08-11 04:51:33,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad1_fastqc.html [2023-08-11 04:51:33,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP14_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP14_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_undetermined_fastqc.html [2023-08-11 04:51:33,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_undetermined_fastqc.html [2023-08-11 04:51:33,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP26_An1AmpPoolHm-B_ad5_fastqc.html [2023-08-11 04:51:33,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP26_An1AmpPoolHm-B_ad5_fastqc.html [2023-08-11 04:51:33,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_FaLAM_ampCol-B_ad_fastqc.html [2023-08-11 04:51:33,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_FaLAM_ampCol-B_ad_fastqc.html [2023-08-11 04:51:33,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP35_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP35_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_An1AmpPoolHm-input_ad1_fastqc.html [2023-08-11 04:51:33,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_An1AmpPoolHm-input_ad1_fastqc.html [2023-08-11 04:51:33,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP4_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP4_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP37_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP37_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP39_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP39_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP18_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP18_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP13_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP13_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP34_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP34_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP24_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP24_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_KyoAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:33,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_daplib_KyoAmpPoolHm-input_ad8_fastqc.html [2023-08-11 04:51:33,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP24_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP24_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP27_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP27_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP20_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,869] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP20_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP40_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP40_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:33,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP9_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:33,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP9_ampCol-B_ad1_fastqc.html [2023-08-11 04:51:34,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP31_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:34,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HK3JJBGXT_n01_AtbZIP31_ampCol-B_ad2_fastqc.html [2023-08-11 04:51:34,637] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-11 04:51:34,639] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-08-11 04:51:34,647] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-08-11 04:51:34,714] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 148 samples (table) [2023-08-11 04:51:34,723] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-08-11 04:51:34,728] multiqc [DEBUG ] No samples found: conpair [2023-08-11 04:51:34,733] multiqc [DEBUG ] No samples found: peddy [2023-08-11 04:51:34,738] multiqc [DEBUG ] No samples found: somalier [2023-08-11 04:51:34,743] multiqc [DEBUG ] No samples found: methylQA [2023-08-11 04:51:34,750] multiqc [DEBUG ] No samples found: mosdepth [2023-08-11 04:51:34,754] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-08-11 04:51:34,758] multiqc [DEBUG ] No samples found: qualimap [2023-08-11 04:51:34,763] multiqc [DEBUG ] No samples found: preseq [2023-08-11 04:51:34,767] multiqc [DEBUG ] No samples found: quast [2023-08-11 04:51:34,772] multiqc [DEBUG ] No samples found: qorts [2023-08-11 04:51:34,776] multiqc [DEBUG ] No samples found: rna_seqc [2023-08-11 04:51:34,780] multiqc [DEBUG ] No samples found: rockhopper [2023-08-11 04:51:34,785] multiqc [DEBUG ] No samples found: rsem [2023-08-11 04:51:34,796] multiqc [DEBUG ] No samples found: rseqc [2023-08-11 04:51:34,800] multiqc [DEBUG ] No samples found: busco [2023-08-11 04:51:34,805] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-08-11 04:51:34,809] multiqc [DEBUG ] No samples found: disambiguate [2023-08-11 04:51:34,814] multiqc [DEBUG ] No samples found: supernova [2023-08-11 04:51:34,826] multiqc [DEBUG ] No samples found: deeptools [2023-08-11 04:51:34,831] multiqc [DEBUG ] No samples found: sargasso [2023-08-11 04:51:34,836] multiqc [DEBUG ] No samples found: verifybamid [2023-08-11 04:51:34,840] multiqc [DEBUG ] No samples found: mirtrace [2023-08-11 04:51:34,845] multiqc [DEBUG ] No samples found: happy [2023-08-11 04:51:34,851] multiqc [DEBUG ] No samples found: mirtop [2023-08-11 04:51:34,857] multiqc [DEBUG ] No samples found: homer [2023-08-11 04:51:34,862] multiqc [DEBUG ] No samples found: macs2 [2023-08-11 04:51:34,867] multiqc [DEBUG ] No samples found: theta2 [2023-08-11 04:51:34,872] multiqc [DEBUG ] No samples found: snpeff [2023-08-11 04:51:34,879] multiqc [DEBUG ] No samples found: gatk [2023-08-11 04:51:34,884] multiqc [DEBUG ] No samples found: htseq [2023-08-11 04:51:34,889] multiqc [DEBUG ] No samples found: bcftools [2023-08-11 04:51:34,895] multiqc [DEBUG ] No samples found: featureCounts [2023-08-11 04:51:34,901] multiqc [DEBUG ] No samples found: fgbio [2023-08-11 04:51:34,916] multiqc [DEBUG ] No samples found: dragen [2023-08-11 04:51:34,922] multiqc [DEBUG ] No samples found: dedup [2023-08-11 04:51:34,926] multiqc [DEBUG ] No samples found: damageprofiler [2023-08-11 04:51:34,948] multiqc [DEBUG ] No samples found: biobambam2 [2023-08-11 04:51:34,952] multiqc [DEBUG ] No samples found: mtnucratio [2023-08-11 04:51:34,954] multiqc [DEBUG ] No samples found: picard [2023-08-11 04:51:34,959] multiqc [DEBUG ] No samples found: prokka [2023-08-11 04:51:34,964] multiqc [DEBUG ] No samples found: samblaster [2023-08-11 04:51:34,973] multiqc [DEBUG ] No samples found: samtools [2023-08-11 04:51:34,977] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-08-11 04:51:34,983] multiqc [DEBUG ] No samples found: bamtools [2023-08-11 04:51:34,987] multiqc [DEBUG ] No samples found: jellyfish [2023-08-11 04:51:34,994] multiqc [DEBUG ] No samples found: vcftools [2023-08-11 04:51:34,999] multiqc [DEBUG ] No samples found: longranger [2023-08-11 04:51:35,004] multiqc [DEBUG ] No samples found: stacks [2023-08-11 04:51:35,009] multiqc [DEBUG ] No samples found: varscan2 [2023-08-11 04:51:35,027] multiqc [DEBUG ] No samples found: bbmap [2023-08-11 04:51:35,033] multiqc [DEBUG ] No samples found: bismark [2023-08-11 04:51:35,039] multiqc [DEBUG ] No samples found: biscuit [2023-08-11 04:51:35,045] multiqc [DEBUG ] No samples found: hicexplorer [2023-08-11 04:51:35,051] multiqc [DEBUG ] No samples found: hicup [2023-08-11 04:51:35,057] multiqc [DEBUG ] No samples found: hicpro [2023-08-11 04:51:35,062] multiqc [DEBUG ] No samples found: salmon [2023-08-11 04:51:35,067] multiqc [DEBUG ] No samples found: kallisto [2023-08-11 04:51:35,074] multiqc [DEBUG ] No samples found: slamdunk [2023-08-11 04:51:35,079] multiqc [DEBUG ] No samples found: star [2023-08-11 04:51:35,084] multiqc [DEBUG ] No samples found: hisat2 [2023-08-11 04:51:35,090] multiqc [DEBUG ] No samples found: tophat [2023-08-11 04:51:35,095] multiqc [DEBUG ] No samples found: bowtie2 [2023-08-11 04:51:35,100] multiqc [DEBUG ] No samples found: bowtie1 [2023-08-11 04:51:35,105] multiqc [DEBUG ] No samples found: snpsplit [2023-08-11 04:51:35,109] multiqc [DEBUG ] No samples found: kat [2023-08-11 04:51:35,114] multiqc [DEBUG ] No samples found: leehom [2023-08-11 04:51:35,119] multiqc [DEBUG ] No samples found: adapterRemoval [2023-08-11 04:51:35,123] multiqc [DEBUG ] No samples found: clipandmerge [2023-08-11 04:51:35,128] multiqc [DEBUG ] No samples found: cutadapt [2023-08-11 04:51:35,132] multiqc [DEBUG ] No samples found: flexbar [2023-08-11 04:51:35,137] multiqc [DEBUG ] No samples found: kaiju [2023-08-11 04:51:35,142] multiqc [DEBUG ] No samples found: kraken [2023-08-11 04:51:35,146] multiqc [DEBUG ] No samples found: malt [2023-08-11 04:51:35,152] multiqc [DEBUG ] No samples found: trimmomatic [2023-08-11 04:51:35,157] multiqc [DEBUG ] No samples found: sickle [2023-08-11 04:51:35,162] multiqc [DEBUG ] No samples found: skewer [2023-08-11 04:51:35,167] multiqc [DEBUG ] No samples found: sortmerna [2023-08-11 04:51:35,172] multiqc [DEBUG ] No samples found: biobloomtools [2023-08-11 04:51:35,178] multiqc [DEBUG ] No samples found: fastq_screen [2023-08-11 04:51:35,183] multiqc [DEBUG ] No samples found: afterqc [2023-08-11 04:51:35,188] multiqc [DEBUG ] No samples found: fastp [2023-08-11 04:51:43,305] multiqc.modules.fastqc.fastqc [INFO ] Found 148 reports [2023-08-11 04:52:12,262] multiqc [DEBUG ] No samples found: pycoqc [2023-08-11 04:52:12,266] multiqc [DEBUG ] No samples found: minionqc [2023-08-11 04:52:12,271] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-08-11 04:52:12,275] multiqc [DEBUG ] No samples found: clusterflow [2023-08-11 04:52:12,280] multiqc [DEBUG ] No samples found: bcl2fastq [2023-08-11 04:52:12,284] multiqc [DEBUG ] No samples found: interop [2023-08-11 04:52:12,290] multiqc [DEBUG ] No samples found: ivar [2023-08-11 04:52:12,294] multiqc [DEBUG ] No samples found: flash [2023-08-11 04:52:12,299] multiqc [DEBUG ] No samples found: seqyclean [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-08-11 04:52:12,299] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-08-11 04:52:12,300] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-08-11 04:52:12,465] multiqc [INFO ] Compressing plot data [2023-08-11 04:52:12,519] multiqc [INFO ] Report : multiqc_report.html [2023-08-11 04:52:12,519] multiqc [INFO ] Data : multiqc_data [2023-08-11 04:52:12,519] multiqc [DEBUG ] Moving data file from '/state/partition1/job-36366522/tmpd96zds3g/multiqc_data' to '/scratch/gencore/logs/html/HK3JJBGXT/merged/multiqc_data' [2023-08-11 04:52:12,644] multiqc [INFO ] MultiQC complete