FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1725
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTT30.17391304347826086No Hit
CATGCATAAGTATATCATCAAAGTTGCTCTTTAGAAATAATTTATTTTTT20.11594202898550725No Hit
AAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGACATC20.11594202898550725No Hit
CCAAAACACTAACCAACCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTA20.11594202898550725No Hit
TAGGCTTATAAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACA20.11594202898550725No Hit
GGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTT20.11594202898550725No Hit
AATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAAC20.11594202898550725No Hit
ATGCGGTTTAAGTTCTTATACTCAATCATACACATGACATCAAGTCATAT20.11594202898550725No Hit
CTTCAAGTTCTTATACTCAATCATACACATGACATCTAGTTATATTTGAC20.11594202898550725No Hit
TTTAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATGAC20.11594202898550725No Hit
TATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGATACACTACTTAGGCTT20.11594202898550725No Hit
CAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGA20.11594202898550725No Hit
AAGACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCT20.11594202898550725No Hit
TACAAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGAC20.11594202898550725No Hit
ACAAGTCATATTCGACTCGAAAACACTAACCAACCTTCTTCTTGCTTCTC20.11594202898550725No Hit
GATCAGATTGCGGTTTAAGTTCTTATACTCAATCATACACATGAGATCAA20.11594202898550725No Hit
TTTTAAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGA20.11594202898550725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)