FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1732
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTAAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGAC40.23094688221709006No Hit
AGTCATATTCGACTCCAAAACACTAACCAACCTTCTTCTTGCTTCTCAAA30.17321016166281755No Hit
AGAAGACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAG20.11547344110854503No Hit
CATCAAGTCATATTCGACTCCAAAACACTAACCAACCTTCTTCTTGCTTC20.11547344110854503No Hit
CTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATGAGTCTTTG20.11547344110854503No Hit
GACTCCAAAACACTAACCAACCTTCTTCTTGCTTCTCAAAGCTTTCATGG20.11547344110854503No Hit
GAATATGACTTGATGTCATGTGTATGATTGAGTATAAGAACTTAAACCGC20.11547344110854503No Hit
GGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTT20.11547344110854503No Hit
TCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATGACATCAAGT20.11547344110854503No Hit
TTTAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATGAC20.11547344110854503No Hit
TAGGCTTTTAAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACA20.11547344110854503No Hit
TGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATGAGTCTTTGGC20.11547344110854503No Hit
CTTTTAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATG20.11547344110854503No Hit
ATGACATCAAGTCATATTCGACTTTAAAACACTAACCAACCTTCTTCTTG20.11547344110854503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)