FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_daplib_ShaAmpPoolHm-input_ad1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1989
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATG20.10055304172951231No Hit
ACTTTGGCTAAACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAG20.10055304172951231No Hit
AAAGGCGTAAGAATTGTATCCTTGTTAGAAGACACAAAGCCAAAGACTCA20.10055304172951231No Hit
GTTTAAGTTGTTATACTCAATCATACACATGACAACAAGTCATATTCGAC20.10055304172951231No Hit
TAGAATCTTCGATCGCAAAACAATCAAACATTGCGAGATCAGATGAATCA20.10055304172951231No Hit
TCAAAGCTTTCATGGTGTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTG20.10055304172951231No Hit
AAGTTCTTATACTCAATCATACACATGACATCAAGTCATATTCGACTTTA20.10055304172951231No Hit
ATGTCTGAGGTGGACCGGTATTATATCTCTCCCGCCAAGGATAGGAAGGT20.10055304172951231No Hit
GTAGTATATATATGAGAAATAGATTAGTGTGAATATGATTTTTTTTGGCA20.10055304172951231No Hit
GAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAAT20.10055304172951231No Hit
GAATTGTATCCTTGTTAGAAGACACAAAGCCAAAGACTCATATGGACTTT20.10055304172951231No Hit
CCCGATCTTATAAGCCTAAGTAGTGTTTCCTTGTTAGAACATACAAAGCC20.10055304172951231No Hit
GATCAAAACTATCGTCATGAGGCTCTCCATTTGAAAGCTTATGAACGTAC20.10055304172951231No Hit
TTCTTATACTCAATCATACACATGAGATCAAGTCATATTCGACTCCAAAA20.10055304172951231No Hit
CAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAG20.10055304172951231No Hit
CATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACCTT20.10055304172951231No Hit
AAGGTTGGTTAGTGTTTTGGAGTCGAATATGACTTGATGTCATGTGTATG20.10055304172951231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)