FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_daplib_CviAmpPoolHm-input_ad2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_daplib_CviAmpPoolHm-input_ad2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1469
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATGACATC30.2042205582028591No Hit
TGAGTCTTTGGCTTTGTGTCTTTTAACAAGGATACAATTCTTACGCCTTT20.13614703880190604No Hit
TACATTCCTGATGTGCATGAATAATTGTTACTTTCATGTATCAGTCAGAT20.13614703880190604No Hit
TACTCAATCATACACATGACATCAAGTCATATTTGACTCCAAAACACTAA20.13614703880190604No Hit
ATGGTGTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTTTAACAA20.13614703880190604No Hit
GTGAATAAACAAATACTAACGTTACTGGTTTTTATGTCTGGCAATGATCT20.13614703880190604No Hit
GAGCGTCAGACAGAGAAAGATCAAAAAGTCTAGTCAAGAAGCTTAACGGT20.13614703880190604No Hit
TTTGTTGTTCTAACAAGGATACAATTCTTACACCTTTAAGATCGGGTTGC20.13614703880190604No Hit
TATAAGATCGGGATGCGGTTTAAGTTCTTATACTCAATCATACACATGAC20.13614703880190604No Hit
TAGGAACTCCATTGCGATAAACTGAAACAAAAAAATAAATAAATGAATAT20.13614703880190604No Hit
TTTTAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATGA20.13614703880190604No Hit
AGTCATATTTGACTCCAAAACACTAACCAACCTTCTTCTAGCTTCTGAAA20.13614703880190604No Hit
TTTCCTTGTTAGAAGACATAAAGCCAAAGACTCGTACGGACTTTGGCTAC20.13614703880190604No Hit
GTTAGAAGACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGA20.13614703880190604No Hit
GTCGAAGACCTAGTCCTCCTTCTCTAATCGGCAAACAAACTACATCCCAC20.13614703880190604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)