FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_daplib_An1AmpPoolHm-input_ad8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_daplib_An1AmpPoolHm-input_ad8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1492
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAGTGTTTTGGAGTCGAATATGACTTGATGTCATGTGTATGATTGAGT30.20107238605898123No Hit
GTTCTTATACTCAATCATACACATGACATCAAGTCATATTCGACTCCAAA20.13404825737265416No Hit
AAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAATA20.13404825737265416No Hit
ATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAACACTACTTAGGCT20.13404825737265416No Hit
AAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGA20.13404825737265416No Hit
AGGAATCGTCGATCTGGACTTGGAATCGTCGAGAAAAGTTTACCGGGTCC20.13404825737265416No Hit
CGACTCCAAAACACTAACCAACCTTTTTCTTGCTTCTCAAAGCTTTCATG20.13404825737265416No Hit
TGTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAT20.13404825737265416No Hit
ATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGACATCAAG20.13404825737265416No Hit
GCTCTATTAGTACAAATAATTACTGAAAATTGATTTATGGACCAATAATC20.13404825737265416No Hit
ATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATGACATCAAG20.13404825737265416No Hit
CTTACAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATCATACACATG20.13404825737265416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)