FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_daplib_An1AmpPoolHm-input_ad2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_daplib_An1AmpPoolHm-input_ad2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1911
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTAAGTTCTTATACTCAATCATACACATGACATCAAGTCATATTCGA30.15698587127158556No Hit
GACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTT20.10465724751439037No Hit
AAGATCGGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGACATC20.10465724751439037No Hit
ATATTGCTAAGAACGAATGGACTTTTGTATTGATAATAGTAGAGCTTTTA20.10465724751439037No Hit
TATAAGCCTAAGTAGTGTTTTCTTGTTAGAAGATACAAAGCCAAAGACTC20.10465724751439037No Hit
GAATATGACTTGATGTCATGTGTATGATTGAGTATAAGAACTTAAACCGC20.10465724751439037No Hit
GACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTA20.10465724751439037No Hit
CAAGGATACAATTCTTACGCCTTTAAGATTACGGTTTCAGTTTGTATACT20.10465724751439037No Hit
TAAGATGCGGTTGCGGTTTAAGTTCTTATACTCAATCATACACATGAGAT20.10465724751439037No Hit
CGAATATGACTTGATGTCATGTGTATGATTGAGTATAAGAACTTAAACCG20.10465724751439037No Hit
CACTAACCAACCTTCTTCTTGCTTCCCAAAGCTTTCATGGTGTAGCCAAA20.10465724751439037No Hit
GTTTAAGTTCTTATACTCAATCATACACATGACATCAAGTCATATTCGAC20.10465724751439037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)