FastQCFastQC Report
Fri 11 Aug 2023
HK3JJBGXT_n01_AtbZIP26_C24AmpPoolHm-B_ad5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3JJBGXT_n01_AtbZIP26_C24AmpPoolHm-B_ad5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3772
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAGCCGCCGCAACGGCAGCGGTCGAGGGTTGACGGAGGGTGACGTTA110.29162248144220576No Hit
CATCAGATCCTACGGTTATAAATCCATTTGTTGTGTATCCACGTGAACTG90.23860021208907742No Hit
TTTGAAGGCTCTAGAGTTGGTTTCCAACATCGACCGAATCTCAACTTATG70.1855779427359491No Hit
TGTTAACTTCTGACGTATGCATCATCAGGTCATTCAGATGACGAATATGT60.15906680805938495No Hit
AAAGTTTTCACCAAAATTAAAATCTCACACTTTTTAATATTTCAACGTGG50.1325556733828208No Hit
ATATATGTCAAACATCAGACTTCATATATATTGAAAAGAAATCTATTATT40.10604453870625664No Hit
CATGCCAATGAGATGGTTGCATCATCATCATCATCATCATTGACATTGTC40.10604453870625664No Hit
TGTGAATGGATTTTTATTAGATCCATATATATATTCTAGCGGAAAACGGT40.10604453870625664No Hit
AGGTAGAGAATTGCCGTCATAATGACGTAAGCGTGTGGTGTGATGAAAAA40.10604453870625664No Hit
AGCTGACGTGGCGTAACCCTCTTTAATTATGACGTAAGTGTGAAAAGAAG40.10604453870625664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)