HK3FCAFXX_n02_lbstarf_m.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK3FCAFXX_n02_lbstarf_m.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46223329
Sequences flagged as poor quality	0
Sequence length	75
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	154454	0.3341472874011303	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGGGGGGG	109307	0.23647582803912717	Illumina Single End PCR Primer 1 (100% over 58bp)
GTGGGTATCGCTTCGGCACGGAGCCCGCCCTGCTCGGCGGACCCCTGAATGCCGTCAGTTGCTGTGGCTCGTCAC	55398	0.11984857256819385	No Hit
GGGGTGGGTATCGCTTCGGCACGGAGCCCGCCCTGCTCGGCGGACCCCTGAATGCCGTCAGTTGCTGTGGCTCGT	51853	0.11217928505322496	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	26900	49.235	49
CGCCGTA	27095	48.979496	47
GCCGTAT	27490	48.252083	48
CGTATCA	29975	44.2652	50
GGTCGCC	31345	42.466133	44
ATCTCGG	31420	42.040485	36
TCTCGGT	31745	41.371563	37
CTCGGTG	32125	40.872643	38
GTCGCCG	32785	40.665184	45
TGGTCGC	32615	40.578197	43
TCGGTGG	32535	40.569984	39
CGGTGGT	34270	38.64729	40
GTGGTCG	35260	37.729332	42
GATCTCG	35165	37.484356	35
AGATCTC	38275	34.960644	34
TCGCCGT	41220	32.027073	46
GTATCAT	44895	29.40837	51
GTAGATC	46255	29.14599	32
AGTGTAG	49770	27.290138	29
GTGTAGA	50310	27.024467	30