HK3FCAFXX_n01_lbstarf_m.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK3FCAFXX_n01_lbstarf_m.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46223329
Sequences flagged as poor quality	0
Sequence length	75
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	152812	0.3305949686142251	TruSeq Adapter, Index 3 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	27550	48.62091	47
ATGCCGT	29135	45.988876	48
CGTATGC	30170	44.583435	45
CTCGTAT	29825	43.64896	43
CGCTATC	29490	43.36361	37
TGCCGTC	30830	43.315556	49
TCTCGTA	29785	43.30325	42
GTATGCC	31215	43.15623	46
TCGTATG	31145	43.002422	44
GCCGTCT	31570	42.03798	50
TATCTCG	31360	40.953396	40
TTCGCTA	32720	40.74841	35
TCGCTAT	32890	39.992638	36
CCGTCTT	34045	38.87141	51
GCTATCT	33060	38.73324	38
ATCTCGT	33320	38.70927	41
CGTCTTC	35280	37.65753	52
CTTCGCT	36615	36.479397	34
ACTTCGC	37520	35.957767	33
CACTTCG	38220	35.29905	32