HK3FCAFXX_n01_bay54b_fem.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK3FCAFXX_n01_bay54b_fem.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16302257
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGACCCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	408311	2.50462865356619	TruSeq Adapter, Index 4 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	64565	62.955376	47
GCCGTCT	63670	62.62358	50
ATGCCGT	64875	62.427242	48
CCGTCTT	63465	62.398552	51
TGCCGTC	65025	62.151554	49
CGTATGC	65755	62.148262	45
CGTCTTC	63960	61.915825	52
GTATGCC	65900	61.84268	46
CTCGTAT	61965	61.2956	43
TCGTATG	65845	61.25632	44
TCTCGTA	59845	60.79941	42
GCTTGAA	63880	60.653828	60
TGCTTGA	64090	59.722218	59
CTTCTGC	65920	59.72029	55
GTCTTCT	65500	59.708195	53
CTGCTTG	64320	59.534748	58
ATCTCGT	60670	59.05754	41
CATCTCG	60995	58.987564	40
TCTGCTT	65535	58.2669	57
TCTTCTG	67055	58.17436	54