HK3FCAFXX_n01_bay54a_fem.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HK3FCAFXX_n01_bay54a_fem.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13356862
Sequences flagged as poor quality	0
Sequence length	75
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	343618	2.572595269757223	TruSeq Adapter, Index 7 (97% over 37bp)
GACGAGACTACCCGCTGAATTTAAGCATATCACTAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACG	19488	0.14590253309497395	No Hit
CGAGACTACCCGCTGAATTTAAGCATATCACTAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGC	17858	0.1336990679397601	No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGACGATATCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	15665	0.11728054089351225	TruSeq Adapter, Index 7 (97% over 37bp)
GATCAGACGAGACTACCCGCTGAATTTAAGCATATCACTAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAG	14356	0.10748033482714726	No Hit
CTGCGGTGTGCGCGGAAGGCTTGGGCGTGAGCCCGGCTGGAGCCGCCGCAGGTGCAGATCTTGGTGGTAGTAGCA	14242	0.10662684094512617	No Hit

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	49995	63.91548	47
ATGCCGT	50430	63.324062	48
CCGTCTT	50140	63.01676	51
CGTATGC	50905	62.976673	45
GCCGTCT	50635	62.794228	50
TCTCGTA	45410	62.77704	42
TCGTATG	50810	62.75333	44
TGCCGTC	50870	62.714603	49
CTCGTAT	46780	62.663303	43
GTATGCC	51110	62.643085	46
ATCTCGT	45360	61.546185	41
ACGATCT	46145	60.567623	38
CGTCTTC	52380	60.513332	52
GCTTGAA	51450	60.472942	60
CTGCTTG	51300	60.111053	58
CTTCTGC	52525	59.89444	55
GACGATC	47005	59.819168	37
TGCTTGA	51865	59.39658	59
AGACGAT	51685	59.09564	36
TCTGCTT	52625	58.446568	57