FastQCFastQC Report
Wed 5 May 2021
HK3CVBGXH_n01_S7_R2_A07_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHK3CVBGXH_n01_S7_R2_A07_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1600971
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG25490.15921587586533423No Hit
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA21800.13616736343131763No Hit
CATATATACTTACACAGTTTGAGCATTCACAGGCCACTAGAAGCCCATCT20120.12567373175404178No Hit
ATGTAATACCTATCAAAATACCAATAACACTTCTCACAGAACTAGAACAA18770.11724134915623081No Hit
GTATAGACCTCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT16570.1034996886264648No Hit
GTGCAGCAGCTACTGAAAACAATATGGCAGTTCATCAAAAAATTAAAAAT16540.10331230234651345No Hit
GTATTAAAGTACATGTAACAGAATTTGCCAGTGTAATCATCTTTAAGTGT16010.10000181140070619No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)