FastQCFastQC Report
Tue 26 Apr 2022
HJYV3BGXL_n01_pIXHALO_ampOkeechobee-B_w.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJYV3BGXL_n01_pIXHALO_ampOkeechobee-B_w.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13271057
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATGCC136148910.259084864152117TruSeq Adapter, Index 1 (96% over 33bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTAT949290.7153085093372744TruSeq Adapter, Index 1 (97% over 36bp)
GGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATGCCG404530.3048212361683022TruSeq Adapter, Index 1 (96% over 32bp)
GAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATGCCGT204130.15381593191861057TruSeq Adapter, Index 1 (96% over 31bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG142990.10774575077177351TruSeq Adapter, Index 1 (97% over 35bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATATCGTATGCC142590.10744434297885992TruSeq Adapter, Index 1 (96% over 33bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)