HJY7YBGX2_n01_ba65.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJY7YBGX2_n01_ba65.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47389148
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC	2814833	5.9398261390983444	TruSeq Adapter, Index 9 (100% over 50bp)
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	135064	0.28501039942731193	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATATCGTATGC	66679	0.14070520955557167	TruSeq Adapter, Index 9 (98% over 50bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	63982	0.13501403317063224	No Hit
GATCGGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATG	53282	0.11243502415363112	TruSeq Adapter, Index 9 (100% over 45bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	311370	43.112698	44
ATCGGAA	338780	41.17892	2
GATCGGA	335730	41.166523	1
TCGTATG	327330	40.94468	43
TCGGAAG	338890	40.94158	3
CTCGTAT	317595	40.890675	42
TCTCGTA	317015	40.83246	41
CGGAAGA	339135	40.82075	4
GATCTCG	317305	40.67885	39
ATCTCGT	317450	40.660168	40
CGATCAG	332235	40.393745	33
ACGATCA	334120	40.311867	32
CACGATC	335175	40.181824	31
GTCACGA	336075	40.084606	29
TCACGAT	335955	40.08188	30
AGTCACG	338295	39.822083	28
GATCAGA	336865	39.72218	34
AGATCTC	326210	39.587475	38
CGTCTGA	344955	39.487743	16
TCAGATC	327215	39.48076	36