HJWYGBGX2_n01_jes_099.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJWYGBGX2_n01_jes_099.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9772433
Sequences flagged as poor quality	0
Sequence length	75
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	87940	0.899878259590012	TruSeq Adapter, Index 27 (97% over 44bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13266	0.13574920390858652	No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGATGTTATCC	11924	0.12201669737720382	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGACCAGGAGCGT	11454	0.11720725023133952	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACGAATTCAGACTGTGAAACTG	11217	0.11478206092587179	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	10300	62.105198	48
CGTATGC	10280	62.08955	46
GTATGCC	10550	60.632584	47
ATGCCGT	10775	59.432343	49
TCGTATG	10765	59.13074	45
CTCGTAT	10810	58.531723	44
GCACACG	12345	57.702915	11
CACACGT	12460	57.226006	12
ACGTCTG	12460	57.08875	15
GCCGTCT	11470	55.683323	51
TATCTCG	11385	55.360622	41
CACGTCT	13055	54.53886	14
CCTTTAT	11835	53.778965	37
TCTCGTA	11860	53.14612	43
AGCACAC	13440	53.129734	10
ACACGTC	13455	52.994133	13
GTCACAT	12265	52.932854	29
TCCAGTC	13510	52.39806	25
CCAGTCA	12985	51.513924	26
CAGTCAC	12805	51.26688	27