FastQCFastQC Report
Thu 21 Oct 2021
HJWL3DRXY_n01_S2Nug.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJWL3DRXY_n01_S2Nug.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22904373
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTTTGATTCCCCTTGTCCGTACCAGTTCTGAGCTGACTGTTCGACGCC460980.2012628767441047No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAACCGAACATCTCGTA332790.14529539839400973TruSeq Adapter, Index 1 (97% over 36bp)
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT277520.12116463524236179No Hit
CTTTGTGTTTGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTT238820.1042682984598618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)