FastQCFastQC Report
Thu 21 Oct 2021
HJWL3DRXY_n01_G12Nug.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJWL3DRXY_n01_G12Nug.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28522161
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTTTGATTCCCCTTGTCCGTACCAGTTCTGAGCTGACTGTTCGACGCC884890.31024647816832673No Hit
CTTTGTGTTTGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTT502350.17612620586497638No Hit
CTTTGTGTTTGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGT470240.16486829311425596No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT451660.15835406019901507No Hit
GTGTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTT413480.14496797770687853No Hit
GTGTTTGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGG397330.13930571389734459No Hit
GTGTTTGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCA382140.13398003047525045No Hit
ACTTTGTGTTTGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCT298600.10469052467658393No Hit
ACTTTGTGTTTGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTG294680.1033161547612048No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT288940.10130368452797107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)