HJWCLAFXY_n02_168_T4_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJWCLAFXY_n02_168_T4_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7980793
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAG	16103	0.20177192918047118	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	11620	0.14559956635888188	No Hit
TACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGA	10458	0.1310396097229937	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	9206	0.11535194560239816	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	9189	0.1151389341886201	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	8994	0.11269556797175419	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	8698	0.10898666335538336	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	8282	0.10377414875940272	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	8183	0.10253367052622465	No Hit
CTCGTAAACACGCACTTAAATATAACTGGCAAAACTAACAGTTTTAACCA	8009	0.10035343605579045	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCTTAGA	4700	37.465366	10
TGTACTC	3305	36.21734	2
CTTAGAG	4865	35.836037	11
CTCTAGT	3335	35.372578	6
TCCACCT	5020	34.93548	6
ACCTTAG	5115	34.356354	9
TCTAGTT	3500	34.305744	7
TTAGAGT	5220	33.332474	12
CACCTTA	5390	32.733578	8
CCACCTT	5575	32.086094	7
GAGTACA	5425	31.888105	15
CTAGTTG	3745	31.407919	8
ACACGAG	5880	28.467323	28
TTTCCAC	6345	28.301727	4
TACTCTA	4340	27.987684	4
ACCTCTA	4215	27.251902	17
ACTCTAG	4350	26.957693	5
GTACTCT	4490	26.58125	3
TACCTCT	4315	26.538681	16
CACGAGA	6440	26.149622	29