HJWCLAFXY_n02_168_T2_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJWCLAFXY_n02_168_T2_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12762980
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATC	143056	1.1208667568232498	Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	92743	0.7266563138075904	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	55020	0.43109054468470526	No Hit
TTTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAG	49324	0.3864614690299601	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	20298	0.15903809298455376	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATA	19771	0.15490896326719936	Illumina Single End PCR Primer 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGTGG	24600	60.99855	51
CGGTGGT	25135	60.47944	52
GGTCGCC	25375	60.474133	56
GTGGTCG	25780	59.876247	54
GGTGGTC	25865	59.448826	53
GTCGCCG	26510	58.09547	57
TACGTGT	27350	57.789764	39
ACGTGTA	27555	57.537384	40
CCGTATC	24405	57.50128	61
AGATCTC	21890	57.41291	46
CTCGGTG	22370	57.14891	50
GTACGTG	26915	57.126472	38
TCTCGGT	22405	57.105812	49
GTCAGTA	28375	56.789524	34
AGTACGT	28085	56.329193	37
TGGTCGC	27120	56.26049	55
TAGATCT	23880	56.101368	45
CAGTACG	27110	55.8523	36
GTATCAT	24780	55.586082	63
GTGTGTC	28515	55.51683	30